'Decoding transcriptional regulation in drosophila' with Alexander Stark

Past Event

16 May 2019, 1:00pm - 2:00pm

Oxford Martin School
34 Broad Street (corner of Holywell and Catte Streets), Oxford, OX1 3BD

This lecture is organised by the Programme on Mind and Machine and The Centre for Neural Circuits and Behaviour. For further information, please email fiona.woods@cncb.ox.ac.uk

In higher eukaryotes, genes are expressed dynamically in complex spatial and temporal patterns, which are progressively refined to set up body plans and define specific cell types. The information about when and where each gene is to be expressed is encoded in the sequences of promoter and enhancer regions and realized by transcription factor and cofactor proteins. Using an interdisciplinary approach in Drosophila, we functionally characterize regulatory sequences by enhancer screens and by assessing core promoter activities of large candidate libraries. We dissect the combinatorics of transcription factors and cofactors by directed tethering in enhancer complementation assays, which reveal functionally distinct classes of transcription factors. Finally, we study how enhancers and the cofactor proteins they recruit activate different types of core promoters, enabling distinct sets of genes and alternative promoters of the same genes to be regulated differently. The distinct compatibilities between cofactors and core promoters form the basis of specificity within and between gene regulatory programs.

About the speaker

Alexander Stark studied biochemistry at the University of Tübingen and the University of North Carolina at Chapel Hill. For his PhD, awarded in 2004, he worked on structural bioinformatics and microRNA target prediction at the EMBL in Heidelberg. This was followed by a postdoctoral fellowship at the Broad Institute and MIT Computer Science and Artificial Intelligence Laboratory, where he focused on comparative and regulatory genomics in Drosophila. Since 2008, Stark has been a group leader at the Research Institute of Molecular Pathology (IMP) in Vienna.